STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159013Si:rp71-17i16.5; Belongs to the PI3/PI4-kinase family. (1106 aa)    
Predicted Functional Partners:
pik3r5
Phosphoinositide-3-kinase, regulatory subunit 5.
   
 0.996
PIK3R5
Phosphoinositide-3-kinase regulatory subunit 5.
   
 0.969
PIK3R6
Phosphoinositide-3-kinase regulatory subunit 6.
    
 0.954
inpp5d
Inositol polyphosphate-5-phosphatase D.
   
 
 0.922
inppl1
Inositol polyphosphate phosphatase-like 1a.
   
 
 0.917
LOC101168299
Inositol polyphosphate phosphatase-like 1b.
   
 
 0.917
LOC101173218
Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.
     
 0.914
LOC101169535
Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma a.
     
 0.914
PIP4K2B
Phosphatidylinositol-5-phosphate 4-kinase type 2 beta.
     
 0.914
pik3cg
Phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma; Belongs to the PI3/PI4-kinase family.
  
  
 
0.904
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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