STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPTX1Uncharacterized protein. (423 aa)    
Predicted Functional Partners:
gria2
Uncharacterized protein.
   
 
 0.768
tmem130
Transmembrane protein 130.
   
  
 0.738
LOC101172590
Bicaudal C homolog 2.
      
 0.732
H2M403_ORYLA
Neuronal pentraxin receptor b.
   
   0.637
LOC101164648
Neuronal pentraxin receptor a.
   
   0.637
opa1
OPA1 mitochondrial dynamin like GTPase; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
   0.621
nit2
Nitrilase family, member 2.
    
 
 0.605
bicc1
BicC family RNA binding protein 1a.
      
 0.573
tmem25
Ig-like domain-containing protein.
   
  
 0.570
rnf2
Ring finger protein 2.
    
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.