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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171577Si:rp71-17i16.4. (225 aa)    
Predicted Functional Partners:
LOC101155425
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
   
 0.946
TNNI2
Troponin I2, fast skeletal type.
   
 0.946
LOC101155923
Uncharacterized protein.
   
 0.946
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle a.
   
0.911
LOC101156569
Troponin I type 1b (skeletal, slow).
   
 0.884
H2LWG8_ORYLA
Troponin I type 1a (skeletal, slow).
   
 0.884
TNNT1
Troponin T1, slow skeletal type.
   
 0.882
LOC101166305
Troponin T type 1 (skeletal, slow).
   
 0.882
LOC101157127
Troponin T type 3a (skeletal, fast).
   
 0.878
LOC101159792
Uncharacterized protein.
   
 0.878
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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