STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171577Si:rp71-17i16.4. (225 aa)    
Predicted Functional Partners:
LOC101155425
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
   
 0.995
TNNI2
Troponin I2, fast skeletal type.
   
 0.995
LOC101155923
Uncharacterized protein.
   
 0.995
LOC101156569
Troponin I type 1b (skeletal, slow).
   
 0.987
H2LWG8_ORYLA
Troponin I type 1a (skeletal, slow).
   
 0.987
LOC101172654
Uncharacterized protein.
   
 0.978
LOC101161235
Troponin I4b, tandem duplicate 2.
   
 0.978
LOC101172899
Troponin I4a.
   
 0.978
TNNT1
Troponin T1, slow skeletal type.
   
 0.973
LOC101166305
Troponin T type 1 (skeletal, slow).
   
 0.973
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.