STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163574Cyclin Dx; Belongs to the cyclin family. (314 aa)    
Predicted Functional Partners:
rbl1
Retinoblastoma-like 1 (p107).
    
 0.974
rb1
Retinoblastoma 1.
    
 0.974
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 0.963
LOC101166216
Cyclin-dependent kinase inhibitor 1A.
   
 0.954
LOC101160207
Uncharacterized protein.
   
 0.954
cdk6
Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily.
   
 0.951
cdk4
Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.
   
 0.951
LOC101165981
Cyclin-dependent kinase 21; Belongs to the protein kinase superfamily.
   
 0.951
cdkn2b
Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).
    
  0.918
cdkn2d
Cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4).
    
  0.912
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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