Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
birc6Baculoviral IAP repeat containing 6. (3950 aa)    
Predicted Functional Partners:
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
 0.976
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
  0.960
map1lc3b
RNA-dependent DNA polymerase.
   
  0.960
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
 
 
 0.956
rps27a
Ribosomal protein S27a.
    
 0.949
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
   
 0.932
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.931
gabarap
GABA(A) receptor-associated protein b.
   
 0.931
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.930
LOC101170049
Zgc:92606.
   
  0.929
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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