Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yipf4Protein YIPF. (246 aa)    
Predicted Functional Partners:
yipf3
Protein YIPF.
   
 
 0.989
yipf1
Protein YIPF.
   
 
 0.946
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
 
 0.910
LOC101155322
Protein YIPF.
   
 
 0.882
LOC101166428
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
      
 0.790
tirap
Toll-interleukin 1 receptor (TIR) domain containing adaptor protein.
      
 0.786
slc66a3
Solute carrier family 66 member 3.
      
 0.663
snx16
Sorting nexin 16.
      
 0.646
LOC101161906
Transmembrane p24 trafficking protein 2.
   
 
 0.644
LOC100125537
Uncharacterized protein.
      
 0.638
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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