utp23 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

utp23

UTP23 small subunit processome component. (255 aa)

Predicted Functional Partners:

krr1

0.990

LOC101168761

0.979

wdr43

0.976

utp11

0.975

LOC101173463

0.973

utp3

0.951

imp3

0.951

wdr46

0.951

ngdn

0.947

nop14

0.941

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101168761	imp3	ENSORLP00000029527	ENSORLP00000005632	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 3.	0.977
LOC101168761	ngdn	ENSORLP00000029527	ENSORLP00000007698	Uncharacterized protein.	Neuroguidin, EIF4E binding protein.	0.979
LOC101168761	nop14	ENSORLP00000029527	ENSORLP00000007133	Uncharacterized protein.	NOP14 nucleolar protein homolog (yeast).	0.985
LOC101168761	utp11	ENSORLP00000029527	ENSORLP00000018427	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.990
LOC101168761	utp23	ENSORLP00000029527	ENSORLP00000002218	Uncharacterized protein.	UTP23 small subunit processome component.	0.979
LOC101168761	utp3	ENSORLP00000029527	ENSORLP00000005022	Uncharacterized protein.	UTP3 small subunit processome component.	0.983
LOC101168761	wdr43	ENSORLP00000029527	ENSORLP00000022843	Uncharacterized protein.	WD repeat domain 43.	0.975
LOC101168761	wdr46	ENSORLP00000029527	ENSORLP00000013583	Uncharacterized protein.	WD repeat domain 46.	0.986
LOC101173463	imp3	ENSORLP00000019540	ENSORLP00000005632	Zona pellucida glycoprotein d.	IMP U3 small nucleolar ribonucleoprotein 3.	0.928
LOC101173463	ngdn	ENSORLP00000019540	ENSORLP00000007698	Zona pellucida glycoprotein d.	Neuroguidin, EIF4E binding protein.	0.955
LOC101173463	nop14	ENSORLP00000019540	ENSORLP00000007133	Zona pellucida glycoprotein d.	NOP14 nucleolar protein homolog (yeast).	0.978
LOC101173463	utp11	ENSORLP00000019540	ENSORLP00000018427	Zona pellucida glycoprotein d.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.984
LOC101173463	utp23	ENSORLP00000019540	ENSORLP00000002218	Zona pellucida glycoprotein d.	UTP23 small subunit processome component.	0.973
LOC101173463	utp3	ENSORLP00000019540	ENSORLP00000005022	Zona pellucida glycoprotein d.	UTP3 small subunit processome component.	0.976
LOC101173463	wdr43	ENSORLP00000019540	ENSORLP00000022843	Zona pellucida glycoprotein d.	WD repeat domain 43.	0.967
LOC101173463	wdr46	ENSORLP00000019540	ENSORLP00000013583	Zona pellucida glycoprotein d.	WD repeat domain 46.	0.980
imp3	LOC101168761	ENSORLP00000005632	ENSORLP00000029527	IMP U3 small nucleolar ribonucleoprotein 3.	Uncharacterized protein.	0.977
imp3	LOC101173463	ENSORLP00000005632	ENSORLP00000019540	IMP U3 small nucleolar ribonucleoprotein 3.	Zona pellucida glycoprotein d.	0.928
imp3	krr1	ENSORLP00000005632	ENSORLP00000024400	IMP U3 small nucleolar ribonucleoprotein 3.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.989
imp3	ngdn	ENSORLP00000005632	ENSORLP00000007698	IMP U3 small nucleolar ribonucleoprotein 3.	Neuroguidin, EIF4E binding protein.	0.995