utp23 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

utp23

UTP23 small subunit processome component. (255 aa)

Predicted Functional Partners:

ddx52

0.967

krr1

0.960

LOC101168761

0.960

wdr43

0.959

utp3

0.952

nhp2

0.947

utp11

0.942

LOC101173463

0.934

cmss1

0.930

nop58

0.918

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101168761	cmss1	ENSORLP00000029527	ENSORLP00000025216	Uncharacterized protein.	Cms1 ribosomal small subunit homolog.	0.668
LOC101168761	ddx52	ENSORLP00000029527	ENSORLP00000027079	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.978
LOC101168761	nhp2	ENSORLP00000029527	ENSORLP00000029133	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.900
LOC101168761	nop58	ENSORLP00000029527	ENSORLP00000003940	Uncharacterized protein.	NOP58 ribonucleoprotein homolog (yeast).	0.938
LOC101168761	utp11	ENSORLP00000029527	ENSORLP00000018427	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.984
LOC101168761	utp23	ENSORLP00000029527	ENSORLP00000002218	Uncharacterized protein.	UTP23 small subunit processome component.	0.960
LOC101168761	utp3	ENSORLP00000029527	ENSORLP00000005022	Uncharacterized protein.	UTP3 small subunit processome component.	0.976
LOC101168761	wdr43	ENSORLP00000029527	ENSORLP00000022843	Uncharacterized protein.	WD repeat domain 43.	0.951
LOC101173463	ddx52	ENSORLP00000019540	ENSORLP00000027079	Zona pellucida glycoprotein d.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.968
LOC101173463	nhp2	ENSORLP00000019540	ENSORLP00000029133	Zona pellucida glycoprotein d.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.868
LOC101173463	nop58	ENSORLP00000019540	ENSORLP00000003940	Zona pellucida glycoprotein d.	NOP58 ribonucleoprotein homolog (yeast).	0.902
LOC101173463	utp11	ENSORLP00000019540	ENSORLP00000018427	Zona pellucida glycoprotein d.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.974
LOC101173463	utp23	ENSORLP00000019540	ENSORLP00000002218	Zona pellucida glycoprotein d.	UTP23 small subunit processome component.	0.934
LOC101173463	utp3	ENSORLP00000019540	ENSORLP00000005022	Zona pellucida glycoprotein d.	UTP3 small subunit processome component.	0.963
LOC101173463	wdr43	ENSORLP00000019540	ENSORLP00000022843	Zona pellucida glycoprotein d.	WD repeat domain 43.	0.935
cmss1	LOC101168761	ENSORLP00000025216	ENSORLP00000029527	Cms1 ribosomal small subunit homolog.	Uncharacterized protein.	0.668
cmss1	ddx52	ENSORLP00000025216	ENSORLP00000027079	Cms1 ribosomal small subunit homolog.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.584
cmss1	krr1	ENSORLP00000025216	ENSORLP00000024400	Cms1 ribosomal small subunit homolog.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.668
cmss1	nhp2	ENSORLP00000025216	ENSORLP00000029133	Cms1 ribosomal small subunit homolog.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.445
cmss1	utp11	ENSORLP00000025216	ENSORLP00000018427	Cms1 ribosomal small subunit homolog.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.528