Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdzd8PDZ domain containing 8. (1208 aa)    
Predicted Functional Partners:
rab7a
Uncharacterized protein.
    
 
 0.743
LOC101157689
RAB7a, member RAS oncogene family.
    
 
 0.743
zfyve27
Zinc finger, FYVE domain containing 27.
    
 
 0.737
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.725
ndufa10
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
      
 0.609
ankle2
Ankyrin repeat and LEM domain containing 2.
    
 
 0.601
rmc1
Regulator of MON1-CCZ1.
      
 0.598
LOC110017181
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
      
 0.573
LOC101167978
Lunapark, ER junction formation factor.
      
 0.569
lnpk
Limb and neural patterns a.
      
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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