Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cspg4Chondroitin sulfate proteoglycan 4. (2278 aa)    
Predicted Functional Partners:
grip1
Glutamate receptor interacting protein 1.
    
 0.850
COL6A6
Collagen type VI alpha 6 chain.
      
 0.641
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.633
col6a1
Collagen, type VI, alpha 1.
   
  
 0.602
LOC101170697
Nectin cell adhesion molecule 3b.
   
  
 0.569
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
   
 
 0.518
gria2
Uncharacterized protein.
    
   0.509
kcnj8
Potassium inwardly-rectifying channel, subfamily J, member 8.
     
 0.505
LOC101171028
Hyaluronan synthase 1.
      
 0.499
has3
Hyaluronan synthase 3.
      
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.