STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspg4Chondroitin sulfate proteoglycan 4. (2278 aa)    
Predicted Functional Partners:
grip1
Glutamate receptor interacting protein 1.
    
 
 0.795
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.704
COL6A6
Collagen type VI alpha 6 chain.
      
 0.576
LOC101171028
Hyaluronan synthase 1.
      
 0.506
has3
Hyaluronan synthase 3.
      
 0.504
LOC101171139
Platelet-derived growth factor alpha polypeptide a; Belongs to the PDGF/VEGF growth factor family.
      
 0.502
usp32
Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.
      
 0.501
col6a1
Collagen, type VI, alpha 1.
   
  
 0.485
Chsy1
Hexosyltransferase.
     
 0.461
chst7
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.444
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.