STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d17TBC1 domain family, member 17. (627 aa)    
Predicted Functional Partners:
rab7a
Uncharacterized protein.
    
 0.962
LOC101157689
RAB7a, member RAS oncogene family.
    
 0.962
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.958
gabarap
GABA(A) receptor-associated protein b.
   
 0.958
LOC101170049
Zgc:92606.
   
 0.946
LOC101165549
Si:dkey-13a21.4.
     
 0.934
fis1
Fission, mitochondrial 1.
    
 0.932
tbc1d15
TBC1 domain family, member 15.
  
  
0.916
armc5
Armadillo repeat containing 5.
   
 0.616
H2LPR1_ORYLA
RAB9B, member RAS oncogene family.
   
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.