STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171014Heterogeneous nuclear ribonucleoprotein D. (314 aa)    
Predicted Functional Partners:
LOC101167735
RRM domain-containing protein.
   
 0.865
LOC101163114
RRM domain-containing protein.
   
 0.865
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.859
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.859
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.838
LOC101166150
Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family.
   
 0.830
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.816
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 0.814
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.811
H2M705_ORYLA
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.811
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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