Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2L8W1_ORYLAUncharacterized protein. (213 aa)    
Predicted Functional Partners:
col10a1
Collagen, type X, alpha 1b.
 
  
  0.835
LOC101155065
Enhancer of polycomb homolog.
 
      0.671
mmp9
Uncharacterized protein.
   
 0.614
H2MDW6_ORYLA
Uncharacterized protein.
 
  
  0.591
H2MFN4_ORYLA
Fibrillar collagen NC1 domain-containing protein.
 
  
  0.573
ncl
Nucleolin.
    
 
 0.511
LOC101156769
Uncharacterized protein.
    
 
 0.511
Col5a2
Collagen, type V, alpha 2a.
 
 
  0.484
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.479
LOC101170341
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.479
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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