Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175135Uncharacterized protein. (232 aa)    
Predicted Functional Partners:
LOC101172978
Erb-b2 receptor tyrosine kinase 3b.
   
 
 0.616
LOC100049233
Androgen receptor beta subtype.
    
 0.611
dnal4
Dynein light chain.
    
   0.601
cnot1
CCR4-NOT transcription complex, subunit 1.
    
   0.482
dvl3
Dishevelled segment polarity protein 3a.
    
 0.475
dvl2
Dishevelled segment polarity protein 2.
    
 0.475
ENSORLP00000032656
Uncharacterized protein.
   
 
 0.475
dvl1
Dishevelled segment polarity protein 1a.
    
 0.475
gcm2
GCM domain-containing protein.
   
   0.474
erbb3
Protein kinase domain-containing protein.
   
 
 0.471
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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