Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
arfgef2ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited). (1836 aa)    
Predicted Functional Partners:
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.725
LOC101159762
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
   0.716
cse1l
CSE1 chromosome segregation 1-like (yeast).
   
 
 0.714
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
    
 
 0.708
arf3
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.690
H2MN86_ORYLA
ADP-ribosylation factor 6b.
    
 
 0.663
LOC105355060
Uncharacterized protein.
    
 
 0.642
ENSORLP00000040659
Uncharacterized protein.
    
 
 0.642
pi4kb
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.606
LOC101161567
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.606
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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