Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdzd11PDZ domain containing 11. (142 aa)    
Predicted Functional Partners:
LOC101158193
Tetraspanin.
    
 0.933
atox1
Antioxidant 1 copper chaperone.
     
 0.881
PLEKHA5
Pleckstrin homology domain containing A5.
    
 0.871
LOC101161206
Uncharacterized protein.
    
 0.871
LOC101175144
Tetraspanin.
    
 0.830
LOC101167595
Solute carrier family 5 member 6a; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
    
 0.775
LOC101168178
Solute carrier family 5 member 6; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
    
 0.775
LOC101171807
ATPase copper transporting beta.
    
 0.745
LOC101173428
Uncharacterized protein.
    
 0.745
LOC101164902
ATPase copper transporting alpha.
    
 0.745
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.