STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdzd11PDZ domain containing 11. (142 aa)    
Predicted Functional Partners:
LOC101167595
Solute carrier family 5 member 6a; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
    
 0.711
LOC101168178
Solute carrier family 5 member 6; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
    
 0.711
LOC101173816
Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
   
  
 0.694
LOC101171807
ATPase copper transporting beta.
    
 0.686
LOC101173428
Uncharacterized protein.
    
 0.686
LOC101164902
ATPase copper transporting alpha.
    
 0.686
LOC101158193
Tetraspanin.
    
 0.676
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.589
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.583
LOC101164395
Solute carrier family 5 member 8, like; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
    
 0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.