Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101173791Si:dkey-193c22.2. (2396 aa)    
Predicted Functional Partners:
COL6A6
Collagen type VI alpha 6 chain.
      
 0.815
grip1
Glutamate receptor interacting protein 1.
    
 0.722
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.627
COL6A3
Collagen type VI alpha 3 chain.
      
 0.601
col6a1
Collagen, type VI, alpha 1.
   
  
 0.601
LOC101170697
Nectin cell adhesion molecule 3b.
   
  
 0.569
LOC101162553
Collagen, type VI, alpha 2.
   
  
 0.517
gria2
Uncharacterized protein.
    
   0.509
Chsy1
Hexosyltransferase.
     
 0.487
csgalnact2
Hexosyltransferase.
     
 0.472
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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