STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl15ADP-ribosylation factor-like 15a. (205 aa)    
Predicted Functional Partners:
gxylt2
Glucoside xylosyltransferase 2.
      
 0.724
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
   
 
 0.708
LOC101158782
Cyclin and CBS domain divalent metal cation transport mediator 4a.
   
 
 0.667
LOC105354685
Cyclin and CBS domain divalent metal cation transport mediator 4b.
   
 
 0.667
cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2b.
   
 
 0.667
H2M6E4_ORYLA
Uncharacterized protein.
    
 0.654
LOC101165932
Intersectin 2a.
    
 0.654
ENSORLP00000034742
Uncharacterized protein.
    
 0.654
ENSORLP00000036645
EH domain-containing protein.
    
 0.654
ENSORLP00000041578
SH3 domain-containing protein.
    
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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