Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gdpd2Glycerophosphodiester phosphodiesterase domain containing 2. (539 aa)    
Predicted Functional Partners:
gpd2
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 0.683
lrp3
Low density lipoprotein receptor-related protein 3.
      
 0.635
l2hgdh
L-2-hydroxyglutarate dehydrogenase.
  
 
 0.546
penk
Uncharacterized protein.
      
 0.502
nppc
C-type natriuretic peptide 4; Exhibits natriuretic and vasodepressant activity. Has cGMP- stimulating activity. May help to regulate body fluid homeostasis in a variety of aquatic environments.
      
 0.479
tbrg1
Transforming growth factor beta regulator 1.
      
 0.436
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
  
 
 0.431
LOC101160184
Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.431
ISYNA1
Inositol-3-phosphate synthase 1.
     
  0.427
lypla2
Lysophospholipase 2.
   
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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