Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163104Reticulon. (193 aa)    
Predicted Functional Partners:
snx15
Sorting nexin 15.
    
   0.671
LOC101161616
Ig-like domain-containing protein.
   
 0.591
Lingo1
Leucine rich repeat and Ig domain containing 1a.
   
 0.591
rtn4r
Reticulon 4 receptor.
    
 0.591
ENSORLP00000032656
Uncharacterized protein.
     
  0.572
arl6ip5
PRA1 family protein.
   
 
 0.559
LOC101170803
Receptor expression-enhancing protein.
    
 
 0.556
LOC101164298
Receptor expression-enhancing protein.
    
 
 0.556
LOC105355636
LRRNT domain-containing protein.
    
 0.555
omg
Oligodendrocyte myelin glycoprotein b.
    
 0.555
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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