Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc40Coiled-coil domain containing 40. (950 aa)    
Predicted Functional Partners:
cfap43
Cilia and flagella associated protein 43.
   
 
 0.982
LOC101164253
Uncharacterized protein.
   
 
 0.976
LOC101159735
Radial spoke head component 4A.
   
 
 0.964
ccdc65
NYD-SP28 domain-containing protein.
   
 
 0.943
tekt2
Tektin 2 (testicular).
   
 
 0.932
RSPH1
Radial spoke head component 1.
   
 
 0.931
armc4
Armadillo repeat containing 4.
   
 
 0.931
LOC101156635
Uncharacterized protein.
    
 
 0.927
LOC101163390
Uncharacterized protein.
    
 0.926
rsph9
Radial spoke head 9 homolog.
   
 
 0.924
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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