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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc40Coiled-coil domain containing 40. (950 aa)    
Predicted Functional Partners:
ccdc65
NYD-SP28 domain-containing protein.
   
 
 0.852
LOC101159735
Radial spoke head component 4A.
   
 
 0.801
ccdc103
Dynein_attach_N domain-containing protein.
      
 0.760
lrrc6
Leucine rich repeat containing 6.
   
 
 0.760
rsph9
Radial spoke head 9 homolog.
   
  
 0.748
Dnali1
Dynein, axonemal, light intermediate chain 1.
   
 
 0.718
dnai2
Dynein axonemal intermediate chain 2a.
      
 0.714
LOC101164253
Uncharacterized protein.
    
 
 0.708
RSPH1
Radial spoke head component 1.
   
 
 0.702
armc4
Armadillo repeat containing 4.
    
 
 0.701
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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