STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vamp4Vesicle-associated membrane protein 4. (153 aa)    
Predicted Functional Partners:
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
   
 0.999
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.999
stx16
Syntaxin 16; Belongs to the syntaxin family.
   
 0.999
LOC101172966
Syntaxin 6; Belongs to the syntaxin family.
    
 0.998
snap29
Synaptosome associated protein 29.
   
 0.998
stx8
Syntaxin 8.
    
 0.998
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.998
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.996
stx18
Syntaxin 18.
    
 0.996
stx10
Syntaxin 10.
    
 0.996
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.