Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc4bLeucine rich repeat containing 4Ba. (729 aa)    
Predicted Functional Partners:
ptprf
Protein tyrosine phosphatase receptor type Fa.
    
 0.958
LOC101159140
Leucine rich repeat containing 4Bb.
  
  
 
0.901
LOC101168742
Protein tyrosine phosphatase receptor type Fb.
    
 0.604
ntng1
Netrin g1a.
   
 0.557
LOC105357770
Vav 3 guanine nucleotide exchange factor b.
   
 0.557
LOC101167215
Family with sequence similarity 151 member B.
    
 
 0.498
LOC101165159
Netrin G2.
   
 
 0.472
ENSORLP00000026279
Laminin N-terminal domain-containing protein.
   
 
 0.472
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
    
 
 0.466
PTPRD
Protein tyrosine phosphatase receptor type D.
    
 0.459
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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