STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kbtbd12Kelch repeat and BTB (POZ) domain containing 12. (620 aa)    
Predicted Functional Partners:
tmem161b
Transmembrane protein 161B.
      
 0.631
xpc
Xeroderma pigmentosum, complementation group C.
  
   
 0.607
pkdcc
Protein kinase domain containing, cytoplasmic b.
    
 0.572
LOC101171520
TPR_REGION domain-containing protein.
    
 0.565
immp2l
Inner mitochondrial membrane peptidase subunit 2.
      
 0.560
prr35
Si:ch211-248l17.3.
      
 0.560
rrp36
Ribosomal RNA processing 36.
      
 0.559
TMEM43
Uncharacterized protein.
      
 0.558
TOGARAM1
TOG array regulator of axonemal microtubules 1.
      
 0.558
trappc6b
Trafficking protein particle complex 6b.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.