STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kbtbd12Kelch repeat and BTB (POZ) domain containing 12. (620 aa)    
Predicted Functional Partners:
rrp36
Ribosomal RNA processing 36.
   
  
 0.758
xpc
Xeroderma pigmentosum, complementation group C.
  
   
 0.758
TMEM43
Uncharacterized protein.
      
 0.738
immp2l
Inner mitochondrial membrane peptidase subunit 2.
   
  
 0.735
trappc6b
Trafficking protein particle complex 6b.
      
 0.735
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
      
 0.717
TOGARAM1
TOG array regulator of axonemal microtubules 1.
      
 0.716
rab11fip3
RAB11 family interacting protein 3 (class II).
      
 0.716
tmem161b
Transmembrane protein 161B.
      
 0.714
metrn
Meteorin, glial cell differentiation regulator.
   
  
 0.713
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.