STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc44a4Solute carrier family 44 member 4; Belongs to the CTL (choline transporter-like) family. (714 aa)    
Predicted Functional Partners:
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
   
  
 0.545
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
      
 0.498
nsdhl
NAD(P) dependent steroid dehydrogenase-like; Belongs to the 3-beta-HSD family.
   
  
 0.472
LOC101160253
Oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide).
      
 0.464
slc25a48
Solute carrier family 25 member 48; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.464
agmo
Alkylglycerol monooxygenase; Belongs to the sterol desaturase family.
      
 0.464
OGDH
Oxoglutarate dehydrogenase.
      
 0.464
rnd3
Rho family GTPase 3a.
      
 0.464
msmo1
Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.
      
 0.463
slc37a4
Solute carrier family 37 member 4a.
      
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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