LOC101175634 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101175634

Myocilin. (570 aa)

Predicted Functional Partners:

eef1aknmt

0.560

hce

0.521

LOC101163820

0.520

LOC101172478

0.520

fgf10

0.520

wdr36

0.517

optn

0.483

il17rel

0.459

LOC101167732

0.423

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163820	LOC101172478	ENSORLP00000011904	ENSORLP00000032132	BAI1-associated protein 2-like 1b.	Arylsulfatase family, member J.	0.520
LOC101163820	LOC101175634	ENSORLP00000011904	ENSORLP00000002383	BAI1-associated protein 2-like 1b.	Myocilin.	0.520
LOC101163820	fgf10	ENSORLP00000011904	ENSORLP00000040733	BAI1-associated protein 2-like 1b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.531
LOC101167732	LOC101175634	ENSORLP00000042762	ENSORLP00000002383	Microfibril associated protein 5.	Myocilin.	0.423
LOC101172478	LOC101163820	ENSORLP00000032132	ENSORLP00000011904	Arylsulfatase family, member J.	BAI1-associated protein 2-like 1b.	0.520
LOC101172478	LOC101175634	ENSORLP00000032132	ENSORLP00000002383	Arylsulfatase family, member J.	Myocilin.	0.520
LOC101172478	fgf10	ENSORLP00000032132	ENSORLP00000040733	Arylsulfatase family, member J.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.520
LOC101175634	LOC101163820	ENSORLP00000002383	ENSORLP00000011904	Myocilin.	BAI1-associated protein 2-like 1b.	0.520
LOC101175634	LOC101167732	ENSORLP00000002383	ENSORLP00000042762	Myocilin.	Microfibril associated protein 5.	0.423
LOC101175634	LOC101172478	ENSORLP00000002383	ENSORLP00000032132	Myocilin.	Arylsulfatase family, member J.	0.520
LOC101175634	eef1aknmt	ENSORLP00000002383	ENSORLP00000029577	Myocilin.	Methyltransferase like 13.	0.560
LOC101175634	fgf10	ENSORLP00000002383	ENSORLP00000040733	Myocilin.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.520
LOC101175634	hce	ENSORLP00000002383	ENSORLP00000018613	Myocilin.	High choriolytic enzyme 1; Participates in the breakdown of the egg envelope, which is derived from the egg extracellular matrix, at the time of hatching. Thus allowing the newly hatched fish to swim free. HCE binds tightly to the egg envelope while it exerts the choriolytic swelling action.	0.521
LOC101175634	il17rel	ENSORLP00000002383	ENSORLP00000014423	Myocilin.	IL17_R_N domain-containing protein.	0.459
LOC101175634	optn	ENSORLP00000002383	ENSORLP00000025752	Myocilin.	Optineurin.	0.483
LOC101175634	wdr36	ENSORLP00000002383	ENSORLP00000024436	Myocilin.	WD repeat domain 36.	0.517
eef1aknmt	LOC101175634	ENSORLP00000029577	ENSORLP00000002383	Methyltransferase like 13.	Myocilin.	0.560
fgf10	LOC101163820	ENSORLP00000040733	ENSORLP00000011904	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	BAI1-associated protein 2-like 1b.	0.531
fgf10	LOC101172478	ENSORLP00000040733	ENSORLP00000032132	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Arylsulfatase family, member J.	0.520
fgf10	LOC101175634	ENSORLP00000040733	ENSORLP00000002383	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Myocilin.	0.520