STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tex11Testis expressed 11. (910 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
      
 0.690
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
  
 0.685
shoc1
Uncharacterized protein.
    
 
 0.591
msh5
MutS homolog 5.
   
  
 0.585
LOC105355271
RING-type domain-containing protein.
    
 
 0.572
MCMDC2
Minichromosome maintenance domain containing 2.
   
  
 0.571
mlh3
MutL homolog 3 (E. coli).
    
 
 0.566
mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
    
 
 0.566
znf318
U1-type domain-containing protein.
   
  
 0.565
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.