STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube3dUbiquitin protein ligase E3D. (396 aa)    
Predicted Functional Partners:
ENSORLP00000030299
DWNN domain-containing protein.
    
 0.917
rbbp6
RING-type domain-containing protein.
    
 0.917
LOC101160962
Uncharacterized protein.
    
 0.917
cpsf3
Cleavage and polyadenylation specific factor 3.
    
 
 0.849
ube2c
Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.622
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.602
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
      
 0.487
dclre1b
DNA cross-link repair 1B.
    
 
 0.457
dclre1c
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
    
 
 0.457
dclre1a
C2H2-type domain-containing protein.
    
 
 0.457
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.