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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myo7aMyosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2215 aa)    
Predicted Functional Partners:
LOC101167616
Usher syndrome 1C.
   
 0.675
fchsd2
FCH and double SH3 domains 2.
   
 
 0.604
tsku
Tsukushi small leucine rich proteoglycan homolog (Xenopus laevis).
     
 0.590
LOC101169538
Usher syndrome 1Ga (autosomal recessive).
   
 0.586
LOC101174708
Usher syndrome 1Gb (autosomal recessive).
   
 0.586
acer3
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.583
p2ry2
Purinergic receptor P2Y2, tandem duplicate 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.582
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.546
LOC101156094
Whirlin b.
    
 0.540
whrn
Whirlin a.
    
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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