Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101160733Deoxyribonuclease I-like 1. (318 aa)    
Predicted Functional Partners:
Wipf1
WH2 domain-containing protein.
    
   0.625
spcs2
Signal peptidase complex subunit 2.
    
 
 0.623
slc25a21
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.622
phf13
PHD finger protein 13.
    
   0.622
tbx20
T-box transcription factor 20.
    
   0.617
spcs1
Signal peptidase complex subunit 1.
    
   0.602
inka2
Inka box actin regulator 2.
    
   0.601
pla2g1b
Phospholipase A(2).
   
    0.549
anapc16
Anaphase promoting complex subunit 16.
      
 0.498
LOC101169383
Cytochrome b5 domain containing 2; Belongs to the cytochrome b5 family.
      
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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