STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170103Caudal type homeobox 4. (274 aa)    
Predicted Functional Partners:
fgf4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.611
ogg1
8-oxoguanine DNA glycosylase.
      
 0.608
pde6c
Phosphodiesterase.
      
 0.567
pex11g
Peroxisomal biogenesis factor 11 gamma.
      
 0.518
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
      
 0.518
LOC101175353
SIX homeobox 7.
      
 0.503
medag
Uncharacterized protein.
      
 0.497
spata22
Spermatogenesis associated 22.
      
 0.489
six6
SIX homeobox 6a.
      
 0.437
LOC101158106
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
      
 0.436
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.