STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170103Caudal type homeobox 4. (274 aa)    
Predicted Functional Partners:
ogg1
8-oxoguanine DNA glycosylase.
      
 0.760
fgf4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.758
wnt11
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
  
 0.754
fgf5
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.732
spata22
Spermatogenesis associated 22.
      
 0.731
LOC101169804
Epithelial cell adhesion molecule.
      
 0.715
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.692
LOC100049520
POU domain protein.
    
 
 0.680
medag
Uncharacterized protein.
      
 0.624
pex11g
Peroxisomal biogenesis factor 11 gamma.
      
 0.624
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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