LOC101163736 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101163736

Sorting nexin 1a. (668 aa)

Predicted Functional Partners:

snx2

0.907

Snx1

0.901

vps26a

0.872

snx6

0.869

snx5

0.869

vps26b

0.855

vps29

0.854

LOC101164612

0.717

snx4

0.717

igf2r

0.695

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163736	LOC101164612	ENSORLP00000002453	ENSORLP00000016137	Sorting nexin 1a.	PX domain-containing protein.	0.717
LOC101163736	Snx1	ENSORLP00000002453	ENSORLP00000001946	Sorting nexin 1a.	Sorting nexin 1b.	0.901
LOC101163736	igf2r	ENSORLP00000002453	ENSORLP00000045581	Sorting nexin 1a.	Insulin-like growth factor 2 receptor.	0.695
LOC101163736	snx2	ENSORLP00000002453	ENSORLP00000043960	Sorting nexin 1a.	Sorting nexin 2.	0.907
LOC101163736	snx4	ENSORLP00000002453	ENSORLP00000020240	Sorting nexin 1a.	Sorting nexin 4.	0.717
LOC101163736	snx5	ENSORLP00000002453	ENSORLP00000014946	Sorting nexin 1a.	Sorting nexin 5.	0.869
LOC101163736	snx6	ENSORLP00000002453	ENSORLP00000012931	Sorting nexin 1a.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.869
LOC101163736	vps26a	ENSORLP00000002453	ENSORLP00000012805	Sorting nexin 1a.	VPS26, retromer complex component A.	0.872
LOC101163736	vps26b	ENSORLP00000002453	ENSORLP00000006560	Sorting nexin 1a.	VPS26, retromer complex component B.	0.855
LOC101163736	vps29	ENSORLP00000002453	ENSORLP00000022447	Sorting nexin 1a.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.854
LOC101164612	LOC101163736	ENSORLP00000016137	ENSORLP00000002453	PX domain-containing protein.	Sorting nexin 1a.	0.717
LOC101164612	Snx1	ENSORLP00000016137	ENSORLP00000001946	PX domain-containing protein.	Sorting nexin 1b.	0.717
LOC101164612	igf2r	ENSORLP00000016137	ENSORLP00000045581	PX domain-containing protein.	Insulin-like growth factor 2 receptor.	0.523
LOC101164612	snx2	ENSORLP00000016137	ENSORLP00000043960	PX domain-containing protein.	Sorting nexin 2.	0.808
LOC101164612	snx4	ENSORLP00000016137	ENSORLP00000020240	PX domain-containing protein.	Sorting nexin 4.	0.901
LOC101164612	snx5	ENSORLP00000016137	ENSORLP00000014946	PX domain-containing protein.	Sorting nexin 5.	0.818
LOC101164612	snx6	ENSORLP00000016137	ENSORLP00000012931	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.798
LOC101164612	vps26a	ENSORLP00000016137	ENSORLP00000012805	PX domain-containing protein.	VPS26, retromer complex component A.	0.640
LOC101164612	vps26b	ENSORLP00000016137	ENSORLP00000006560	PX domain-containing protein.	VPS26, retromer complex component B.	0.726
LOC101164612	vps29	ENSORLP00000016137	ENSORLP00000022447	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.796