Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101170936Ligand of numb-protein X 2b. (692 aa)    
Predicted Functional Partners:
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
      
 0.679
LOC101165413
Hairy-related 8.2.
      
 0.657
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.582
ubc
Ubiquitin B.
    
  0.566
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.559
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.559
rps27a
Ribosomal protein S27a.
    
  0.559
e4f1
E4F transcription factor 1.
    
 
 0.537
LOC101168988
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.532
mpp5
Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.
   
 0.532
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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