STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwc27CWC27 spliceosome associated cyclophilin. (486 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.992
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.991
prpf19
Pre-mRNA processing factor 19.
    
 0.990
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.988
rnf113a
Uncharacterized protein.
   
 0.983
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.961
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.961
WDR25
WD repeat domain 25.
    
 0.940
bud13
BUD13 homolog.
    
 0.937
snw1
SNW domain containing 1.
   
 0.937
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.