STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
npas4Neuronal PAS domain protein 4a. (930 aa)    
Predicted Functional Partners:
arnt
Aryl hydrocarbon receptor nuclear translocator.
    
0.958
LOC101159313
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
0.775
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
0.771
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
0.771
LOC101165450
Clock circadian regulator b.
    
0.715
LOC101175434
Nuclear receptor coactivator.
    
 0.715
ncoa2
Nuclear receptor coactivator.
    
 0.715
LOC101172430
Neuronal PAS domain protein 2.
    
0.715
NCOA3
Nuclear receptor coactivator.
    
 0.715
LOC101156489
Nuclear receptor coactivator 3.
    
 0.715
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.