Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dopey1Uncharacterized protein. (403 aa)    
Predicted Functional Partners:
H2L9F2_ORYLA
Uncharacterized protein.
 
     0.942
mon2
MON2 homolog, regulator of endosome-to-Golgi trafficking.
   
 
 0.810
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
   0.700
trap1
TNF receptor-associated protein 1.
    
   0.646
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
      
 0.602
LOC101175396
Si:dkey-246g23.2.
    
 
 0.600
SLC66A2
Solute carrier family 66 member 2.
    
 
 0.600
wdr19
WD repeat domain 19.
      
 0.579
pus7
Pseudouridine synthase 7.
      
 0.491
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
   
  
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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