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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105353878Neural retina leucine zipper. (426 aa)    
Predicted Functional Partners:
rpe65
Retinoid isomerohydrolase RPE65 a.
      
 0.678
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 0.592
LOC101164305
Nuclear receptor subfamily 2, group E, member 3.
    
 0.592
LOC101170052
RAR-related orphan receptor C b.
   
  
 0.551
LOC101164545
RAR-related orphan receptor C a.
   
  
 0.504
LOC101171022
BTB and CNC homology 1, basic leucine zipper transcription factor 1 b.
   
 0.498
bach2
BTB and CNC homology 1, basic leucine zipper transcription factor 2b.
   
 0.498
LOC101172454
Uncharacterized protein.
   
 0.498
LOC101173402
BTB and CNC homology 1, basic leucine zipper transcription factor 1 a.
   
 0.498
nfe2l2
Nuclear factor, erythroid 2-like 2a.
   
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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