STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165163Hypoxia inducible factor 1 subunit alpha, like. (652 aa)    
Predicted Functional Partners:
epas1
Uncharacterized protein.
  
  
 
0.910
hif1a
Hypoxia inducible factor 1 subunit alpha a.
  
  
 
0.909
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
    
 0.909
arnt
Aryl hydrocarbon receptor nuclear translocator.
   
 0.905
vhl
Von Hippel-Lindau tumor suppressor.
    
 0.903
egln1
Egl-9 family hypoxia-inducible factor 1a.
    
 0.882
ELOB
Ubiquitin-like domain-containing protein.
    
 0.878
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.872
egln3
Egl-9 family hypoxia-inducible factor 3.
    
 0.871
cul2
Cullin 2; Belongs to the cullin family.
    
 0.858
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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