Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scocShort coiled-coil protein a. (80 aa)    
Predicted Functional Partners:
fez1
Fasciculation and elongation protein zeta 1 (zygin I).
   
 
 0.944
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.909
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
    
   0.902
fez2
Si:ch211-57i17.1.
   
 
 0.861
LOC101155054
Si:dkey-288i20.2.
   
 
 0.861
H2LNH2_ORYLA
SCHIP-1 domain-containing protein.
    
   0.759
prpf38b
Uncharacterized protein.
      
 0.751
dlgap3
Discs, large (Drosophila) homolog-associated protein 3.
      
 0.742
arfrp1
ADP-ribosylation factor related protein 1.
      
 0.722
mmaa
Metabolism of cobalamin associated A.
      
 0.687
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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