Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101168222Proline-rich transmembrane protein 1. (241 aa)    
Predicted Functional Partners:
CNIH2
Cornichon family AMPA receptor auxiliary protein 2.
    
 
 0.654
LOC101155158
Cornichon family AMPA receptor auxiliary protein 3.
    
 
 0.654
gria2
Uncharacterized protein.
    
 0.633
prrt4
Si:dkey-31f5.11.
    
 
 0.470
LOC101163260
Calcium channel, voltage-dependent, gamma subunit 8a.
    
 0.470
LOC105354297
Uncharacterized protein.
    
 
 0.470
LOC101165174
Calcium channel, voltage-dependent, gamma subunit 8b.
    
 0.470
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
     
 0.464
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.415
lrrtm2
Leucine rich repeat transmembrane neuronal 2.
    
 0.411
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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