Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhx5LIM homeobox 5. (396 aa)    
Predicted Functional Partners:
ccnk
Cyclin K; Belongs to the cyclin family.
    
   0.717
LOC101162780
LIM domain binding 1a.
    
 0.659
ldb2
LIM domain binding 2a.
    
 0.659
LOC101158085
LIM-domain binding 1b.
    
 0.659
emx2
Empty spiracles homeobox 2.
    
 0.648
LOC101160967
Iroquois homeobox 7.
    
 
 0.639
Fezf2
FEZ family zinc finger 2.
    
 0.632
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.600
wnt4
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 0.567
LOC101155782
Iroquois homeobox 1b.
   
 
 0.546
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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