Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170433Coronin; Belongs to the WD repeat coronin family. (456 aa)    
Predicted Functional Partners:
LOC101174920
Potassium channel tetramerization domain containing 13.
    
 
 0.720
sez6l2
Seizure related 6 homolog (mouse)-like 2.
  
 
 0.717
wdr44
WD repeat domain 44.
      
 0.692
kif22
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.680
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
  
  
 0.659
strn4
Striatin, calmodulin binding protein 4.
      
 0.658
ypela
Protein yippee-like 3; May be involved in proliferation and apoptosis in myeloid precursor cells; Belongs to the yippee family.
    
 
 0.638
galnt12
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.619
LOC101160416
MOB kinase activator 1A.
      
 0.614
LOC101172219
Uncharacterized protein.
    
 
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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