STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160259Rab-GAP TBC domain-containing protein. (847 aa)    
Predicted Functional Partners:
trappc8
Trafficking protein particle complex 8.
    
 
 0.518
ulk1
Unc-51 like autophagy activating kinase 1.
    
  0.518
LOC101167046
Unc-51 like autophagy activating kinase 1a.
    
  0.518
LOC101160680
Unc-51 like autophagy activating kinase 2.
    
  0.518
LOC101159434
RAB, member of RAS oncogene family-like 2.
    
 0.507
LOC101158957
RAB25, member RAS oncogene family a.
    
 0.507
LOC101159906
RAB11B, member RAS oncogene family, b.
    
 0.507
RAB11A
RAB11A, member RAS oncogene family.
    
 0.507
LOC101160399
RAB11B, member RAS oncogene family, a.
    
 0.507
LOC101156358
Uncharacterized protein.
    
 0.507
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.