STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158789Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (251 aa)    
Predicted Functional Partners:
gstk1
Serine/threonine/tyrosine kinase 1b.
    
 0.625
cacng5
Calcium channel, voltage-dependent, gamma subunit 5a.
     
 0.617
H2MI11_ORYLA
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.604
egf
Epidermal growth factor.
    
 0.595
LOC101155594
Si:ch73-60h1.1.
      
 0.558
htr7
5-hydroxytryptamine (serotonin) receptor 7a; Belongs to the G-protein coupled receptor 1 family.
      
 0.540
LOC101169622
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.518
LOC101167740
Uncharacterized protein; Belongs to the tropomyosin family.
    
 0.511
cavin1
Caveolae associated protein 1a.
    
 
 0.510
H2MT93_ORYLA
Cardiac myosin light chain-1.
    
 
 0.507
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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