yif1a protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yif1a

Yip1 interacting factor homolog A (S. cerevisiae). (359 aa)

Predicted Functional Partners:

rabac1

0.926

yipf4

0.910

yipf5

0.889

LOC101169003

0.889

maea

0.823

tmed10

0.765

dusp27

0.754

derl1

0.737

KDELR2

0.734

LOC101160362

0.734

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KDELR2	LOC101169003	ENSORLP00000010789	ENSORLP00000038573	ER lumen protein-retaining receptor.	Protein YIPF.	0.410
KDELR2	tmed10	ENSORLP00000010789	ENSORLP00000045187	ER lumen protein-retaining receptor.	Transmembrane p24 trafficking protein 10.	0.890
KDELR2	yif1a	ENSORLP00000010789	ENSORLP00000002574	ER lumen protein-retaining receptor.	Yip1 interacting factor homolog A (S. cerevisiae).	0.734
KDELR2	yipf5	ENSORLP00000010789	ENSORLP00000001953	ER lumen protein-retaining receptor.	Protein YIPF.	0.410
LOC101160362	LOC101169003	ENSORLP00000016240	ENSORLP00000038573	ER lumen protein-retaining receptor.	Protein YIPF.	0.410
LOC101160362	tmed10	ENSORLP00000016240	ENSORLP00000045187	ER lumen protein-retaining receptor.	Transmembrane p24 trafficking protein 10.	0.890
LOC101160362	yif1a	ENSORLP00000016240	ENSORLP00000002574	ER lumen protein-retaining receptor.	Yip1 interacting factor homolog A (S. cerevisiae).	0.734
LOC101160362	yipf5	ENSORLP00000016240	ENSORLP00000001953	ER lumen protein-retaining receptor.	Protein YIPF.	0.410
LOC101169003	KDELR2	ENSORLP00000038573	ENSORLP00000010789	Protein YIPF.	ER lumen protein-retaining receptor.	0.410
LOC101169003	LOC101160362	ENSORLP00000038573	ENSORLP00000016240	Protein YIPF.	ER lumen protein-retaining receptor.	0.410
LOC101169003	derl1	ENSORLP00000038573	ENSORLP00000041992	Protein YIPF.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.881
LOC101169003	maea	ENSORLP00000038573	ENSORLP00000032489	Protein YIPF.	Macrophage erythroblast attacher.	0.610
LOC101169003	rabac1	ENSORLP00000038573	ENSORLP00000029922	Protein YIPF.	PRA1 family protein.	0.787
LOC101169003	tmed10	ENSORLP00000038573	ENSORLP00000045187	Protein YIPF.	Transmembrane p24 trafficking protein 10.	0.690
LOC101169003	yif1a	ENSORLP00000038573	ENSORLP00000002574	Protein YIPF.	Yip1 interacting factor homolog A (S. cerevisiae).	0.889
derl1	LOC101169003	ENSORLP00000041992	ENSORLP00000038573	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.881
derl1	tmed10	ENSORLP00000041992	ENSORLP00000045187	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Transmembrane p24 trafficking protein 10.	0.414
derl1	yif1a	ENSORLP00000041992	ENSORLP00000002574	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Yip1 interacting factor homolog A (S. cerevisiae).	0.737
derl1	yipf4	ENSORLP00000041992	ENSORLP00000002214	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.555
derl1	yipf5	ENSORLP00000041992	ENSORLP00000001953	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.881