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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155859Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)    
Predicted Functional Partners:
LOC101163644
Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.
   
 0.988
LOC101156432
Zgc:86598; Belongs to the protein kinase superfamily.
   
 0.988
fundc1
Uncharacterized protein.
     
 0.954
LOC101173532
FUN14 domain containing 1.
     
 0.954
dvl3
Dishevelled segment polarity protein 3a.
    
 0.949
dvl2
Dishevelled segment polarity protein 2.
    
 0.949
dvl1
Dishevelled segment polarity protein 1a.
    
 0.949
CSNK2A2
Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.
   
 0.947
ssrp1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
  0.934
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
  0.933
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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