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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169674SKI family transcriptional corepressor 1. (735 aa)    
Predicted Functional Partners:
mier1
Mesoderm induction early response 1b, transcriptional regulator.
      
 0.478
lbh
LBH regulator of WNT signaling pathway.
      
 0.453
hsf4
Heat shock transcription factor 4.
      
 0.453
zfand5
Zinc finger, AN1-type domain 5a.
      
 0.453
cxxc4
CXXC finger 4.
      
 0.450
LOC101156111
T-box transcription factor 2a.
      
 0.439
LOC101167482
Thyroid hormone receptor associated protein 3a.
      
 0.437
LOC100301625
Forkhead box Q2.
      
 0.433
LOC101166725
Zic family member 6.
      
 0.410
LOC101160104
Pre-B-cell leukemia homeobox 1b.
      
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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