Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prss35Serine protease 35. (423 aa)    
Predicted Functional Partners:
LOC101173922
Transmembrane protein 54b.
      
 0.609
prrx1
Paired related homeobox 1a.
   
  
 0.521
LOC101167327
FAM20C golgi associated secretory pathway kinase.
     
 0.519
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
     
 0.519
col6a1
Collagen, type VI, alpha 1.
   
  
 0.508
ube3d
Ubiquitin protein ligase E3D.
      
 0.507
akirin2
Akirin 2.
      
 0.489
vgll3
Vestigial-like family member 3.
   
  
 0.481
timp3
NTR domain-containing protein.
   
  
 0.477
LOC100302438
Thrombospondin 1b.
  
 
 0.473
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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