Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173859Uncharacterized protein. (362 aa)    
Predicted Functional Partners:
fh
Fumarate hydratase.
    
 0.822
cs
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.812
xylb
Xylulokinase homolog (H. influenzae).
    
 0.794
LOC101173617
Malate synthase-like.
    
 0.786
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.774
aadat
Aminoadipate aminotransferase.
   
 
  0.759
got2
Aspartate aminotransferase.
     
 0.678
GOT1
Aspartate aminotransferase.
     
 0.660
got1
Aspartate aminotransferase.
     
 0.660
ilvbl
IlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family.
    
 0.647
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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