Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101170278Serine protease; Belongs to the peptidase S1B family. (389 aa)    
Predicted Functional Partners:
timp-2b
Tissue inhibitor of metalloproteinase-2b.
   
  
 0.683
timp3
NTR domain-containing protein.
   
  
 0.591
vgll3
Vestigial-like family member 3.
   
  
 0.576
col6a1
Collagen, type VI, alpha 1.
   
  
 0.570
fkbp10
Peptidylprolyl isomerase.
   
  
 0.535
atoh8
BHLH domain-containing protein.
      
 0.530
timp2
Tissue inhibitor of metalloproteinase-2a.
   
  
 0.526
prrx1
Paired related homeobox 1a.
   
  
 0.521
LOC101167327
FAM20C golgi associated secretory pathway kinase.
     
 0.519
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
     
 0.519
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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