Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101166729PHD-type domain-containing protein. (1402 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.977
rsf1
Uncharacterized protein.
     
 
0.900
BPTF
Bromodomain PHD finger transcription factor.
   
 
0.763
LOC101155276
Bromodomain PHD finger transcription factor.
   
 
0.763
chrac1
Chromatin accessibility complex subunit 1.
     
 0.752
pole3
CBFD_NFYB_HMF domain-containing protein.
     
 0.706
H2MK72_ORYLA
Uncharacterized protein.
   
 
 0.671
virma
Vir like m6A methyltransferase associated.
   
   0.630
LOC101160234
Bromo domain-containing protein.
    
 0.621
H2M348_ORYLA
Tudor-knot domain-containing protein.
   
    0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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